java - Trying to run both hadoop MapReduce commands and linux commands in shell script -

i have shell script this.

#!/bin/sh /home/hduser/downloads/hadoop/bin/stop-all.sh echo "running hadoop program" cd /home/hduser/downloads/hadoop sudo rm -r /tmp/* sudo rm -r /app/* cd sudo mkdir -p /app/hadoop/tmp sudo chown hduser:hadoop /app/hadoop/tmp sudo chmod 750 /app/hadoop/tmp hadoop namenode -format /home/hduser/downloads/hadoop/bin/start-all.sh jps hadoop dfs -mkdir -p ~/downloads/hadoop/input hadoop dfs -copyfromlocal /home/hduser/desktop/iris.arff ~/downloads/hadoop/input hadoop jar ~/desktop/try.jar 2 weka.classifiers.trees.j48  ~/downloads/hadoop/input ~/downloads/hadoop/output /home/hduser/downloads/hadoop/bin/stop-all.sh 

i invoking script in java program this

    public class uiinput      {         public static void main(string[] args) throws ioexception         {      //      runtime.getruntime().exec("/home/hduser/desktop/initial.sh");     new processbuilder("/home/hduser/desktop/initial.sh");             processbuilder pb = new processbuilder("/home/hduser/desktop/initial.sh");                process process=pb.start();                      inputstream = process.getinputstream();                inputstreamreader isr = new inputstreamreader(is);                bufferedreader br = new bufferedreader(isr);                 string line;                 system.out.printf("output of running %s is:",                    arrays.tostring(args));                 while ((line = br.readline()) != null)                {                  system.out.println(line);                }     } } 

my start-all.sh,stop-all.sh , echo commands getting executed present in script getting executed other commands not.my output like

output of running [] is:no jobtracker stop localhost: no tasktracker stop no namenode stop localhost: no datanode stop localhost: no secondarynamenode stop running hadoop program starting namenode, logging /home/hduser/downloads/hadoop/libexec/../logs/hadoop-hduser-namenode-ubuntu.out localhost: starting datanode, logging /home/hduser/downloads/hadoop/libexec/../logs/hadoop-hduser-datanode-ubuntu.out localhost: starting secondarynamenode, logging /home/hduser/downloads/hadoop/libexec/../logs/hadoop-hduser-secondarynamenode-ubuntu.out starting jobtracker, logging /home/hduser/downloads/hadoop/libexec/../logs/hadoop-hduser-jobtracker-ubuntu.out localhost: starting tasktracker, logging /home/hduser/downloads/hadoop/libexec/../logs/hadoop-hduser-tasktracker-ubuntu.out stopping jobtracker localhost: stopping tasktracker no namenode stop 

can me?i when run java code want of commands executed in shell script. thank you

run script below code , see problem details in system out

package test;  import java.io.bufferedreader; import java.io.ioexception; import java.io.inputstream; import java.io.inputstreamreader;   public class commandlineexecutor {      public final int exec_ok = 0;     public final int exec_failed = 1;      public static void main(string[] args) {          commandlineexecutor cmd = new commandlineexecutor();         string[] script  = new string[]{ "/home/hduser/desktop/initial.sh"};         boolean jointoprocess = true;  //main threads waits process finished.         int result = cmd.execute(script, jointoprocess);         system.out.println( result == 0 ? "script succesfully run" : "script failed" );      }      public int execute(string[] cmd, boolean jointoprocess) {         runtime runtime = runtime.getruntime();         process proc = null;         try {             system.out.println("executing cmd: "+concat(cmd));             proc = runtime.exec(cmd);             streamprocessor errorstreamprocessor = new streamprocessor(proc.geterrorstream());             streamprocessor outputstreamprocessor = new streamprocessor(proc.getinputstream());             errorstreamprocessor.start();             outputstreamprocessor.start();         } catch (exception e) {             e.printstacktrace(system.out);             return exec_failed;         }         try {             int result = exec_ok;             if(jointoprocess)              result = proc.waitfor();             return result;         } catch (interruptedexception e) {             system.out.println("error @ executing command: " + concat(cmd) );             e.printstacktrace(system.out);         }         return exec_failed;      }       public static string concat(string[] array) {             stringbuffer buffer = new stringbuffer();             (int = 0; < array.length; i++) {                 if (i > 0)                     buffer.append(' ');                 buffer.append(array[i]);             }             return buffer.tostring();         }         class streamprocessor extends thread {              private inputstream inputstream;              public streamprocessor(inputstream is) {                 this.inputstream = is;             }              public void run() {                 try {                     inputstreamreader isr = new inputstreamreader(inputstream);                     bufferedreader br = new bufferedreader(isr);                     while (true) {                         string s = br.readline();                         if (s == null)                             break;                         system.out.println(s);                     }                 } catch (ioexception e) {                    e.printstacktrace(system.out);                 }             }          }  }